Package: SoilManageR 1.0.1.9002

SoilManageR: Calculate Soil Management Indicators for Agricultural Practice Assessment

Calculate numerical agricultural soil management indicators from on a management timeline of an arable field. Currently, indicators for carbon (C) input into the soil system, soil tillage intensity rating (STIR), number of soil cover and living plant cover days, N fertilization and livestock intensity, and plant diversity are implemented. The functions can also be used independently of the management timeline to calculate some indicators. The package contains tables with reference information for the functions, as well as a '*.xlsx' template to collect the management data.

Authors:Olivier Heller [cre, aut], Raphaël Wittwer [ctb]

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SoilManageR.pdf |SoilManageR.html✨
SoilManageR/json (API)
NEWS

# Install 'SoilManageR' in R:
install.packages('SoilManageR', repos = c('https://oli-heller.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/soilmanager/soilmanager

Datasets:

On CRAN:

Conda:

4.85 score 4 scripts 133 downloads 29 exports 48 dependencies

Last updated 2 days agofrom:44dbd61c93. Checks:4 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 19 2025
R-4.5-winOKMar 19 2025
R-4.5-macOKMar 19 2025
R-4.5-linuxOKMar 19 2025
R-4.4-winNOTEMar 19 2025
R-4.4-macNOTEMar 19 2025
R-4.4-linuxNOTEMar 19 2025
R-4.3-winNOTEMar 19 2025
R-4.3-macNOTEMar 19 2025

Exports:%>%arrange_management_dfC_inputC_input_cover_cropsC_input_cropscalculate_C_input_tibblecalculate_indicatorscalculate_indicators_by_cropcalculate_N_input_tibblecalculate_soil_cover_tibblecalculate_STIR_tibblecheck_management_dfCN_input_amendmentscount_pesticide_applicationsfilter_management_dfidentify_main_cropsindicators_by_datemanagement_dfmanagement_df_from_excelN_inputplant_coverplant_diversityplot_management_dfproductivity_indicatorrelative_yieldshannon_indexsoil_coverSTIRtillage_intensity

Dependencies:cellrangerclicolorspacecpp11crayondplyrfansifarvergenericsggplot2ggthemesgluegtablehmsisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6rbibutilsRColorBrewerRdpackreadxlrematchrlangscalesstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr

SoilManageR

Rendered fromSoilManageR.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2025-02-17
Started: 2024-02-09

Readme and manuals

Help Manual

Help pageTopics
arrange management_df by date, categoryarrange_management_df
Estimate carbon inputC_input
Estimate C inputs by cover cropsC_input_cover_crops
Estimate C inputs by cropsC_input_crops
Look-up-table with default values to calculate carbon (C) inputs by cropsC_input_crops_LUT
Calculate C input tibblecalculate_C_input_tibble
Calculate all soil management indicatorscalculate_indicators
Calculate soil management indicators by cropcalculate_indicators_by_crop
Calculate N input tibblecalculate_N_input_tibble
Caculate soil cover tibblecalculate_soil_cover_tibble
Calculate STIR tibblecalculate_STIR_tibble
Check management_df for consitencycheck_management_df
Estimate C and N inputs of organic amendmentsCN_input_amendments
Look-up-table with default values to calculate C and N inputs by organic amendmentsCN_input_amendments_LUT
Count number of pesticide applicationscount_pesticide_applications
Example of a management_dfEXAMPLE_data
Filter management_df for pattern in commentsfilter_management_df
Identify main cropsidentify_main_crops
Extract indicators by a specific dateindicators_by_date
Constructor for management_dfmanagement_df
Import management_df from excel filemanagement_df_from_excel
Estimate nitrogen inputN_input
Estimate soil cover percentage by plantsplant_cover
Look-up-table with default values to estimate soil cover by plantsplant_cover_LUT
Calculate plant diversity indicatorsplant_diversity
Plot a management dataframeplot_management_df
Plotting soil_cover_tibblesplot.soil_cover_tibble
Calculate average productivityproductivity_indicator
Calculate relative yieldrelative_yield
Calculate Shannon Index for diversityshannon_index
Estimate soil cover by plants and residuessoil_cover
Calculate STIR valueSTIR
Look-up-table with default values for tillage operationsSTIR_values_LUT
Estimate tillage intensitytillage_intensity